/*  XspanSoapClient.java version 1
 *
 *  Copyright (c) all rights reserved xspan.org, december 2004 
 */


package org.xspan.client;

import org.xspan.webService.*;
import java.util.Vector;
import java.io.*;


/**
 * Class to test the XSPAN axis webservice access
 *
 * @author kcm, xspan.org
 */
public class XspanSoapClient {
    
    public XspanSoapClient() {
    }


	/**
	 * will return list of organisms in database
	 *
	 * @return each element in array will be name of organism in the database
	 */
    public String[] getOrganisms() {
	
		String answer[] = null;
		try {
	    	org.xspan.webService.XspanService service =
			new org.xspan.webService.XspanServiceLocator();

	    	org.xspan.webService.Xspan xs = service.getxspan();      
	    	answer = xs.getOrganisms();

		} catch (Exception e) { System.out.println(e); e.printStackTrace(); }
        return answer;
    } // end getSpecies()
    
    
    /**
     * will return the names of the high-level structure mapping types
     *
     * @return each element in array is a name
     */
    public String[] getMappingTypes() {

		String[] answer = null;
		try {
		    org.xspan.webService.XspanService service =
			new org.xspan.webService.XspanServiceLocator();

		    org.xspan.webService.Xspan xs = service.getxspan();      
		    answer = xs.getMappingTypes();

		} catch (Exception e) { System.out.println(e); e.printStackTrace(); }

		return answer;
    } // end getMappingTypes

    
    /**
     * will return a list of subtypes based on a high-level mapping type from getMappingTypes
     *
     *@param 	in 	the type you wish the subtypes for, will come from output of
     *          	getMappingTypes()
     *
     * @return 	each element in array is the name of a subtype
     */
    public String[] getMappingSubTypes(String in) {

		String[] answer = {"empty"};
		try {
		    org.xspan.webService.XspanService service =
			new org.xspan.webService.XspanServiceLocator();

		    org.xspan.webService.Xspan xs = service.getxspan();      
		    answer = xs.getSubMappingTypes(in);
	   
		} catch (Exception e) { System.out.println(e); e.printStackTrace(); }

        return answer;
    } // end getMappingSubTypes
    
    
    /**
     * will return the anatomy of the organism you specify
     *
     * @param 	in 	the name of the organism you want the anatomy for
     *
     * @return 	an Anatomy object containing the organism's anatomy, look
     *         	at wsdl file for details of Anatomy object
     */
    public org.xspan.webService.Anatomy getAnatomy(String in) {
    
		org.xspan.webService.Anatomy answer = new org.xspan.webService.Anatomy();

		try {

		    org.xspan.webService.XspanService service =
			new org.xspan.webService.XspanServiceLocator();

		    org.xspan.webService.Xspan xs = service.getxspan();      
		    answer = xs.getAnatomy(in);
   	   
		} catch (Exception e) { System.out.println(e); e.printStackTrace(); }

        return answer;
    } // end getAnatomy
    
    
    /**
     * method to get mappings
     *
     * @param 	id 			the tissue id you wish to find mappings for eg FBbt:0001234
     * @param 	species 	the organism you want to find mappings in. this can be
     *        				specified eg "Celegans" or can be "none"
     * @param 	type 		the type of mapping you want to search for. this can be
     *        				"ALL" or one of the names returned from the getSubMappingTypes
     *
     * @return 	an array of Mapping objects with each element being a single Mapping between 
     *			two structures, see wsdl file for more details on Mapping.java
     */
    public org.xspan.webService.Mapping[] getMapping(String id, String species, String type) {

		org.xspan.webService.Mapping[] map = new org.xspan.webService.Mapping[1];
		try {

	    	org.xspan.webService.XspanService service =
			new org.xspan.webService.XspanServiceLocator();

	    	org.xspan.webService.Xspan xs = service.getxspan();      
	    	map = xs.getMappings(id, species, type);
   	   
		} catch (Exception e) { System.out.println(e); e.printStackTrace(); }

		return map;
    } // end getMapping
        
    
    
    
       
    
    /* 
     * used to test above methods
     */
    public static void main(String[] args) {
        XspanSoapClient dem = new XspanSoapClient();        	

        System.out.println("Test getOrganisms:");
        String[] answer = dem.getOrganisms();
		System.out.println("Length of answer: "+answer.length);
        	for(int i=0; i<answer.length; i++) {
	    	System.out.println("  "+answer[i]);
		}
        System.out.println("\n\n\n ******** \n\n\n");
        
        
        System.out.println("Test getMappingTypes:");
        answer = dem.getMappingTypes();
        for(int i=0; i<answer.length; i++) {
            System.out.println("Type " + (i+1) + ": " + answer[i]);
        }        
        System.out.println("\n\n\n ******** \n\n\n");
          
          
        System.out.println("Test getSubMappingTypes(Expert):");
        answer = dem.getMappingSubTypes("Expert");
        for(int i=0; i<answer.length; i++) {
            System.out.println("SubType " + (i+1) + ": " + answer[i]);
        }        
        System.out.println("Test getSubMappingTypes(Derived):");
        answer = dem.getMappingSubTypes("Derived");
        for(int i=0; i<answer.length; i++) {
            System.out.println("SubType " + (i+1) + ": " + answer[i]);
        }        
        System.out.println("\n\n\n ******** \n\n\n");   
	
	
		System.out.println("query(WBdag:0005775, ALL,  ALL)");
        m = dem.getMapping("WBdag:0005775", "ALL",  "ALL");
        for(int i=0; i<m.length; i++) {
            org.xspan.webService.Mapping m2 = m[i];
            System.out.println("Mapping " + (i+1) +":");
            System.out.println("  Tissue1: "+m2.getTissueId1()+" : "+m2.getTissueName1()+":"+m2.getOrganism1());
	    System.out.println("  Tissue2: "+m2.getTissueId2()+" : "+m2.getTissueName2()+":"+m2.getOrganism2());
	    System.out.println("  Mapping: "+m2.getMapName()+" : "+m2.getMapType());
	    System.out.println("           "+m2.getCreator()+" : "+m2.getDate());
	    System.out.println("           "+m2.getDefn()+" : "+m2.getMappingId());
        }	

		System.out.println("\n\n\n ******** \n\n\n"); 
	
        
		System.out.println("getAnatomy(Abstract Mouse)");
		org.xspan.webService.Anatomy an = dem.getAnatomy("Abstract Mouse");
		org.xspan.webService.Tissue[] tAll = an.getTissues();
		org.xspan.webService.TissueRelationship[] rAll = an.getRelationships();
		System.out.println("  tissues:");
		for(int i=0; i<tAll.length; i++) {
		    org.xspan.webService.Tissue t = tAll[i];
		    System.out.println("    "+t.getId()+" "+t.getName()+" "+t.getOrganism());
		}
		System.out.println("  relationships:");
		for(int i=0; i<rAll.length; i++) {
	    	org.xspan.webService.TissueRelationship r = rAll[i];
	    	System.out.println("    "+r.getTissueId1()+" "+r.getTissueId2()+" "+r.getRelationship());
		}			
        
    } // end main        
     
} // end XspanClient